FASTQ Dataset (not analyzed since 3.5 TB): https://www.niagads.org/datasets/ng00059, https://www.niagads.org/datasets/ng00112

DGE:

FASTQ to BAM: https://github.com/adityamittal13/Alzheimer_Research/blob/main/bam.sh

https://github.com/adityamittal13/Alzheimer_Research/blob/main/deseq.R

DTE:

Kallisto command for quantification: https://github.com/adityamittal13/Alzheimer_Research/blob/main/kallisto.sh

https://github.com/adityamittal13/Alzheimer_Research/blob/main/sleuth.R